1 Response_reg#1
4-113 aa · 110 aa · 21.8% of protein
Raw token
Response_reg:4:7.52e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS01460
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_042847305
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS01460Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 505 aa (35.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:408:0.0000000265:449:42:423 HTH_AraC#3
463-490 aa · 28 aa · 5.5% of protein
Raw token
HTH_AraC:463:0.0000612:490:28:42- Raw architecture: Response_reg:4:7.52e-30:113:110:111#HTH_AraC:408:0.0000000265:449:42:42#HTH_AraC:463:0.0000612:490:28:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328393-331597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_02800RefSeq proteinWP_390429730.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00004Context members
ACGHAT_RS01460ACGHAT_RS01465
Partner locus tags
ACGHAT_RS01460ACGHAT_RS01465
Partner old locus tags
K310107B6_02800K310107B6_02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390429730.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS01460Primary locus identifier stored in the genes table.
Old locus tagK310107B6_02800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval328 393-329 910 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span328 393-331 597 ntGCF_042847305::NZ_AP031447.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span328 393-331 597 nt3 205 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 393 nt331 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS01460GCF_042847305#ACGHAT_RS01460
RRunclassifiedCurrent focus
328 393-329 910 nt · Forward (+)
ACGHAT_RS01465GCF_042847305#ACGHAT_RS01465
HKClassic
329 882-331 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS01460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153445
Simplified PFAM architecture for RROC_0153445
PFAM domain coverage: 179 / 505 aa (35.4%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-489]
- Domain count: 2
- Matched identifier: RROC_0153445
- Positioned domains: Response_reg 4-113 ; HTH_18 421-489
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS01460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key