1 Response_reg#1
7-122 aa · 116 aa · 48.5% of protein
Raw token
Response_reg:7:0.00000000131:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS05515
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_042847305
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042847305#ACGHAT_RS05515Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-234 aa · 93 aa · 38.9% of protein
Raw token
LytTR:142:2.21e-16:234:98:98- Raw architecture: Response_reg:7:0.00000000131:122:120:111#LytTR:142:2.21e-16:234:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042847305::NZ_AP031447.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1158093-1158812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_10610RefSeq proteinWP_390429987.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00016Context members
ACGHAT_RS05515
Partner locus tags
ACGHAT_RS05515
Partner old locus tags
K310107B6_10610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390429987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS05515Primary locus identifier stored in the genes table.
Old locus tagK310107B6_10610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval1 158 093-1 158 812 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 158 093-1 158 812 ntGCF_042847305::NZ_AP031447.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span1 158 093-1 158 812 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 158 093 nt1 158 812 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHAT_RS05515GCF_042847305#ACGHAT_RS05515
RRLytTRCurrent focus
1 158 093-1 158 812 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS05515The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0928769
Simplified PFAM architecture for RROC_0928769
PFAM domain coverage: 203 / 239 aa (84.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-121] | LytTR[145-232]
- Domain count: 2
- Matched identifier: RROC_0928769
- Positioned domains: Response_reg 7-121 ; LytTR 145-232
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS05515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key