1 Response_reg#1
4-108 aa · 105 aa · 46.3% of protein
Raw token
Response_reg:4:7.48e-26:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS05490
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_042847305
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS05490Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 227 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-219 aa · 66 aa · 29.1% of protein
Raw token
Trans_reg_C:154:3.81e-23:219:71:77- Raw architecture: Response_reg:4:7.48e-26:108:106:111#Trans_reg_C:154:3.81e-23:219:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1153351-1155443Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_10560RefSeq proteinWP_101879787.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00015Context members
ACGHAT_RS05490ACGHAT_RS05495
Partner locus tags
ACGHAT_RS05490ACGHAT_RS05495
Partner old locus tags
K310107B6_10560K310107B6_10570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101879787.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NH89Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NH89_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS05490Primary locus identifier stored in the genes table.
Old locus tagK310107B6_10560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval1 153 351-1 154 034 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 153 351-1 155 443 ntGCF_042847305::NZ_AP031447.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span1 153 351-1 155 443 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 153 351 nt1 155 443 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS05490GCF_042847305#ACGHAT_RS05490
RROmpRCurrent focus
1 153 351-1 154 034 nt · Forward (+)
ACGHAT_RS05495GCF_042847305#ACGHAT_RS05495
HKClassic
1 154 307-1 155 443 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865435#CDL22_RS10375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1364861
Simplified PFAM architecture for RROC_1364861
PFAM domain coverage: 175 / 227 aa (77.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[152-219]
- Domain count: 2
- Matched identifier: RROC_1364861
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 152-219 ; Trans_reg_C 152-219
Cluster members and taxonomy
Representative gene: GCF_002865435#CDL22_RS10375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key