1 HisKA_3#1
106-171 aa · 66 aa · 22.1% of protein
Raw token
HisKA_3:106:0.000000000000178:171:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS04190
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_042847305
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS04190Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 298 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
210-296 aa · 87 aa · 29.2% of protein
Raw token
HATPase_c:210:0.00000000022:296:101:109- Raw architecture: HisKA_3:106:0.000000000000178:171:68:68#HATPase_c:210:0.00000000022:296:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span865678-867199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_07970RefSeq proteinWP_390429912.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00011Context members
ACGHAT_RS04185ACGHAT_RS04190
Partner locus tags
ACGHAT_RS04185ACGHAT_RS04190
Partner old locus tags
K310107B6_07960K310107B6_07970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390429912.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS04190Primary locus identifier stored in the genes table.
Old locus tagK310107B6_07970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval866 303-867 199 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span865 678-867 199 ntGCF_042847305::NZ_AP031447.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span865 678-867 199 nt1 522 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
865 678 nt867 199 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS04185GCF_042847305#ACGHAT_RS04185
RRNarL
865 678-866 298 nt · Reverse (-)
ACGHAT_RS04190GCF_042847305#ACGHAT_RS04190
HKClassicCurrent focus
866 303-867 199 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS04190The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2889585
Simplified PFAM architecture for HKOC_2889585
PFAM domain coverage: 65 / 298 aa (21.8%)
1 aa298 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[106-170]
- Domain count: 1
- Matched identifier: HKOC_2889585
- Positioned domains: HisKA_3 106-170
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS04190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key