1 HisKA#1
139-202 aa · 64 aa · 17.7% of protein
Raw token
HisKA:139:0.000000000000702:202:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS02085
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_042847305
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS02085Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 361 aa (47.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-360 aa · 109 aa · 30.2% of protein
Raw token
HATPase_c:252:3.33e-27:360:110:109- Raw architecture: HisKA:139:0.000000000000702:202:64:64#HATPase_c:252:3.33e-27:360:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span458840-460613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_04020RefSeq proteinWP_226971621.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00007Context members
ACGHAT_RS02080ACGHAT_RS02085
Partner locus tags
ACGHAT_RS02080ACGHAT_RS02085
Partner old locus tags
K310107B6_04010K310107B6_04020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226971621.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS02085Primary locus identifier stored in the genes table.
Old locus tagK310107B6_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval459 528-460 613 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span458 840-460 613 ntGCF_042847305::NZ_AP031447.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span458 840-460 613 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
458 840 nt460 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS02080GCF_042847305#ACGHAT_RS02080
RROmpR
458 840-459 541 nt · Forward (+)
ACGHAT_RS02085GCF_042847305#ACGHAT_RS02085
HKClassicCurrent focus
459 528-460 613 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537205#LIP96_RS14975Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2743847
Simplified PFAM architecture for HKOC_2743847
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-202] | HATPase_c[252-360]
- Domain count: 2
- Matched identifier: HKOC_2743847
- Positioned domains: HisKA 140-202 ; HATPase_c 252-360
Cluster members and taxonomy
Representative gene: GCF_020537205#LIP96_RS14975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key