1 HisKA#1
496-560 aa · 65 aa · 8.9% of protein
Raw token
HisKA:496:0.00000000000000654:560:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHAT_RS01305
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_042847305
ClassHKTypeClassicLength727 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042847305#ACGHAT_RS01305Stable P2CS identifier used across views.
GenomeGCF_042847305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length727 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 727 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa727 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
613-702 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:613:0.00000000000537:702:94:109- Raw architecture: HisKA:496:0.00000000000000654:560:65:64#HATPase_c:613:0.00000000000537:702:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042847305::NZ_AP031447.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span288215-291068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK310107B6_02490RefSeq proteinWP_118444712.1
Context group ID
GCF_042847305::NZ_AP031447.1::G00003Context members
ACGHAT_RS01300ACGHAT_RS01305
Partner locus tags
ACGHAT_RS01300ACGHAT_RS01305
Partner old locus tags
K310107B6_02480K310107B6_02490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118444712.1Primary protein accession used for annex mappings.
UniProt accessionA0A415S967Primary UniProt accession resolved in the annex database.
UniProt IDA0A415S967_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHAT_RS01305Primary locus identifier stored in the genes table.
Old locus tagK310107B6_02490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031447.1Sequence record reported by the local genomic context database.
Genomic interval288 885-291 068 nt2 184 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span288 215-291 068 ntGCF_042847305::NZ_AP031447.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042847305::NZ_AP031447.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031447.1All displayed genes belong to this local TCS context.
Neighborhood span288 215-291 068 nt2 854 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
288 215 nt291 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHAT_RS01300GCF_042847305#ACGHAT_RS01300
RROmpR
288 215-288 913 nt · Forward (+)
ACGHAT_RS01305GCF_042847305#ACGHAT_RS01305
HKClassicCurrent focus
288 885-291 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475365#DWZ50_RS10165Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0719422
Simplified PFAM architecture for HKOC_0719422
PFAM domain coverage: 161 / 727 aa (22.1%)
1 aa727 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[496-560] | HATPase_c[608-703]
- Domain count: 2
- Matched identifier: HKOC_0719422
- Positioned domains: HisKA 496-560 ; HATPase_c 608-703
Cluster members and taxonomy
Representative gene: GCF_003475365#DWZ50_RS10165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_042847305
AssemblyASM4284730v1 · Complete Genomehaploid
Genome composition3 807 276 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key