1 HisKA#1
163-222 aa · 60 aa · 16.1% of protein
Raw token
HisKA:163:0.000000000000444:222:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFRAW_RS12610
Histidine kinase, Classic
Bacillus mycoides · GCF_042790735
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042790735#ACFRAW_RS12610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 372 aa (44.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
266-370 aa · 105 aa · 28.2% of protein
Raw token
HATPase_c:266:2.56e-20:370:109:109- Raw architecture: HisKA:163:0.000000000000444:222:61:64#HATPase_c:266:2.56e-20:370:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042790735::NZ_JBHTYO010000003.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span612429-613547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFRAW_12610RefSeq proteinWP_002065228.1
Context group ID
GCF_042790735::NZ_JBHTYO010000003.1::G00025Context members
ACFRAW_RS12610
Partner locus tags
ACFRAW_RS12610
Partner old locus tags
ACFRAW_12610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002065228.1Primary protein accession used for annex mappings.
UniProt accessionR8HM43Primary UniProt accession resolved in the annex database.
UniProt IDR8HM43_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFRAW_RS12610Primary locus identifier stored in the genes table.
Old locus tagACFRAW_12610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHTYO010000003.1Sequence record reported by the local genomic context database.
Genomic interval612 429-613 547 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span612 429-613 547 ntGCF_042790735::NZ_JBHTYO010000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042790735::NZ_JBHTYO010000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHTYO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span612 429-613 547 nt1 119 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
612 429 nt613 547 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFRAW_RS12610GCF_042790735#ACFRAW_RS12610
HKClassicCurrent focus
612 429-613 547 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS16110Use this link to inspect the representative gene detail.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634227
Simplified PFAM architecture for HKOC_2634227
PFAM domain coverage: 292 / 377 aa (77.5%)
1 aa377 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[16-144] | HisKA[168-227] | HATPase_c[274-376]
- Domain count: 3
- Matched identifier: HKOC_2634227
- Positioned domains: HisK_N 16-144 ; HisKA 168-227 ; HATPase_c 274-376
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS16110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042790735
AssemblyASM4279073v1 · Scaffoldhaploid
Genome composition5 823 599 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key