1 PAS_9#1
92-183 aa · 92 aa · 21.7% of protein
Raw token
PAS_9:92:0.00000000751:183:98:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFRAW_RS01260
Histidine kinase, Classic
Bacillus mycoides · GCF_042790735
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042790735#ACFRAW_RS01260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 423 aa (60.3%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation3 items
2 HisKA#2
198-257 aa · 60 aa · 14.2% of protein
Raw token
HisKA:198:0.0000000000479:257:60:643 HATPase_c#3
307-409 aa · 103 aa · 24.3% of protein
Raw token
HATPase_c:307:1.23e-27:409:107:109- Raw architecture: PAS_9:92:0.00000000751:183:98:102#HisKA:198:0.0000000000479:257:60:64#HATPase_c:307:1.23e-27:409:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042790735::NZ_JBHTYO010000001.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span236197-237468Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFRAW_01260RefSeq proteinWP_002064486.1
Context group ID
GCF_042790735::NZ_JBHTYO010000001.1::G00005Context members
ACFRAW_RS01260
Partner locus tags
ACFRAW_RS01260
Partner old locus tags
ACFRAW_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002064486.1Primary protein accession used for annex mappings.
UniProt accessionC2XRJ4Primary UniProt accession resolved in the annex database.
UniProt IDC2XRJ4_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFRAW_RS01260Primary locus identifier stored in the genes table.
Old locus tagACFRAW_01260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHTYO010000001.1Sequence record reported by the local genomic context database.
Genomic interval236 197-237 468 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span236 197-237 468 ntGCF_042790735::NZ_JBHTYO010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042790735::NZ_JBHTYO010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHTYO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span236 197-237 468 nt1 272 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
236 197 nt237 468 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFRAW_RS01260GCF_042790735#ACFRAW_RS01260
HKClassicCurrent focus
236 197-237 468 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS06690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2235501
Simplified PFAM architecture for HKOC_2235501
PFAM domain coverage: 165 / 423 aa (39.0%)
1 aa423 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[198-258] | HATPase_c[307-410]
- Domain count: 2
- Matched identifier: HKOC_2235501
- Positioned domains: HisKA 198-258 ; HATPase_c 307-410
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS06690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042790735
AssemblyASM4279073v1 · Scaffoldhaploid
Genome composition5 823 599 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key