1 HAMP#1
51-129 aa · 79 aa · 21.6% of protein
Raw token
HAMP:51:0.00000000382:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFRAW_RS11115
Histidine kinase, Classic
Bacillus mycoides · GCF_042790735
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042790735#ACFRAW_RS11115Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 366 aa (69.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.3% of protein
Raw token
HisKA:133:0.0000000000000299:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.1% of protein
Raw token
HATPase_c:243:1.06e-32:352:110:109- Raw architecture: HAMP:51:0.00000000382:129:79:69#HisKA:133:0.0000000000000299:199:67:64#HATPase_c:243:1.06e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042790735::NZ_JBHTYO010000003.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span320125-321899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFRAW_11115RefSeq proteinWP_377952740.1
Context group ID
GCF_042790735::NZ_JBHTYO010000003.1::G00023Context members
ACFRAW_RS11110ACFRAW_RS11115
Partner locus tags
ACFRAW_RS11110ACFRAW_RS11115
Partner old locus tags
ACFRAW_11110ACFRAW_11115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377952740.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFRAW_RS11115Primary locus identifier stored in the genes table.
Old locus tagACFRAW_11115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHTYO010000003.1Sequence record reported by the local genomic context database.
Genomic interval320 799-321 899 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span320 125-321 899 ntGCF_042790735::NZ_JBHTYO010000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042790735::NZ_JBHTYO010000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHTYO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span320 125-321 899 nt1 775 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
320 125 nt321 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFRAW_RS11110GCF_042790735#ACFRAW_RS11110
RROmpR
320 125-320 802 nt · Forward (+)
ACFRAW_RS11115GCF_042790735#ACFRAW_RS11115
HKClassicCurrent focus
320 799-321 899 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042790735#ACFRAW_RS11115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2717486
Simplified PFAM architecture for HKOC_2717486
PFAM domain coverage: 176 / 366 aa (48.1%)
1 aa366 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2717486
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_042790735#ACFRAW_RS11115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042790735
AssemblyASM4279073v1 · Scaffoldhaploid
Genome composition5 823 599 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key