1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:5.89e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACEUKI_RS01710
Response regulator OmpR family
Bifidobacterium sp. 2450 · GCF_041900695
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041900695#ACEUKI_RS01710Stable P2CS identifier used across views.
GenomeGCF_041900695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.94e-30:235:77:77- Raw architecture: Response_reg:15:5.89e-36:122:109:111#Trans_reg_C:164:1.94e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041900695::NZ_JBHEEA010000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136702-138497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACEUKI_01715RefSeq proteinWP_374156424.1
Context group ID
GCF_041900695::NZ_JBHEEA010000003.1::G00010Context members
ACEUKI_RS01710ACEUKI_RS01715
Partner locus tags
ACEUKI_RS01710ACEUKI_RS01715
Partner old locus tags
ACEUKI_01715ACEUKI_01720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_374156424.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACEUKI_RS01710Primary locus identifier stored in the genes table.
Old locus tagACEUKI_01715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHEEA010000003.1Sequence record reported by the local genomic context database.
Genomic interval136 702-137 424 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span136 702-138 497 ntGCF_041900695::NZ_JBHEEA010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041900695::NZ_JBHEEA010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHEEA010000003.1All displayed genes belong to this local TCS context.
Neighborhood span136 702-138 497 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 702 nt138 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACEUKI_RS01710GCF_041900695#ACEUKI_RS01710
RROmpRCurrent focus
136 702-137 424 nt · Forward (+)
ACEUKI_RS01715GCF_041900695#ACEUKI_RS01715
HKClassic
137 424-138 497 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041900695#ACEUKI_RS01710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0901477
Simplified PFAM architecture for RROC_0901477
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0901477
- Positioned domains: Response_reg 15-122 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_041900695#ACEUKI_RS01710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 342 075 · GCF_041900695
AssemblyASM4190069v1 · Contighaploid
Genome composition2 433 772 bp · 60,0% GCBifidobacterium sp. 2450
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key