1 Response_reg#1
6-90 aa · 85 aa · 89.5% of protein
Raw token
Response_reg:6:0.000000000000687:90:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACEUKI_RS00500
Response regulator, CheY family
Bifidobacterium sp. 2450 · GCF_041900695
ClassRRTypeCheYLength95 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041900695#ACEUKI_RS00500Stable P2CS identifier used across views.
GenomeGCF_041900695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length95 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage85 / 95 aa (89.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa95 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.000000000000687:90:85:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041900695::NZ_JBHEEA010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span129334-129621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACEUKI_00505RefSeq proteinWP_374156341.1
Context group ID
GCF_041900695::NZ_JBHEEA010000001.1::G00004Context members
ACEUKI_RS00500
Partner locus tags
ACEUKI_RS00500
Partner old locus tags
ACEUKI_00505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_374156341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACEUKI_RS00500Primary locus identifier stored in the genes table.
Old locus tagACEUKI_00505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHEEA010000001.1Sequence record reported by the local genomic context database.
Genomic interval129 334-129 621 nt288 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 334-129 621 ntGCF_041900695::NZ_JBHEEA010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041900695::NZ_JBHEEA010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHEEA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span129 334-129 621 nt288 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 334 nt129 621 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACEUKI_RS00500GCF_041900695#ACEUKI_RS00500
RRCheYCurrent focus
129 334-129 621 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041900695#ACEUKI_RS00500The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2473049
Simplified PFAM architecture for RROC_2473049
PFAM domain coverage: 84 / 95 aa (88.4%)
1 aa95 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-89]
- Domain count: 1
- Matched identifier: RROC_2473049
- Positioned domains: Response_reg 6-89
Cluster members and taxonomy
Representative gene: GCF_041900695#ACEUKI_RS00500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 342 075 · GCF_041900695
AssemblyASM4190069v1 · Contighaploid
Genome composition2 433 772 bp · 60,0% GCBifidobacterium sp. 2450
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key