1 HisKA_3#1
244-302 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:244:0.00000000000000775:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ960_RS03475
Histidine kinase, Classic
Bifidobacterium longum · GCF_041447125
ClassHKTypeClassicLength797 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447125#SQ960_RS03475Stable P2CS identifier used across views.
GenomeGCF_041447125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length797 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 797 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:345:0.000000000000198:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:694:0.0000201:764:71:68- Raw architecture: HisKA_3:244:0.00000000000000775:302:59:68#HATPase_c:345:0.000000000000198:438:110:109#HisKA_3:694:0.0000201:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447125::NZ_CP139452.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span799698-803035Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447125::NZ_CP139452.1::G00006Context members
SQ960_RS03470SQ960_RS03475
Partner locus tags
SQ960_RS03470SQ960_RS03475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140580.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTR3Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTR3_BIFLJDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ960_RS03475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139452.1Sequence record reported by the local genomic context database.
Genomic interval800 642-803 035 nt2 394 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span799 698-803 035 ntGCF_041447125::NZ_CP139452.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447125::NZ_CP139452.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139452.1All displayed genes belong to this local TCS context.
Neighborhood span799 698-803 035 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
799 698 nt803 035 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ960_RS03470GCF_041447125#SQ960_RS03470
RRNarL
799 698-800 558 nt · Reverse (-)
SQ960_RS03475GCF_041447125#SQ960_RS03475
HKClassicCurrent focus
800 642-803 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000410595#F778_RS0101545Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556246
Simplified PFAM architecture for HKOC_0556246
PFAM domain coverage: 413 / 800 aa (51.6%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-141] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-619]
- Domain count: 4
- Matched identifier: HKOC_0556246
- Positioned domains: DUF7134 16-141 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-619
Cluster members and taxonomy
Representative gene: GCF_000410595#F778_RS0101545
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 7 over 7 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447125
Assembly2021S6-1 · Complete Genomehaploid
Genome composition2 482 096 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key