1 Response_reg#1
9-136 aa · 128 aa · 44.8% of protein
Raw token
Response_reg:9:7.72e-29:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ960_RS03470
Response regulator NarL family
Bifidobacterium longum · GCF_041447125
ClassRRTypeNarLLength286 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447125#SQ960_RS03470Stable P2CS identifier used across views.
GenomeGCF_041447125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length286 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 286 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
223-280 aa · 58 aa · 20.3% of protein
Raw token
HTH_LUXR:223:8.54e-25:280:58:58- Raw architecture: Response_reg:9:7.72e-29:136:128:111#HTH_LUXR:223:8.54e-25:280:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447125::NZ_CP139452.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span799698-803035Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447125::NZ_CP139452.1::G00006Context members
SQ960_RS03470SQ960_RS03475
Partner locus tags
SQ960_RS03470SQ960_RS03475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140579.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTR2Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTR2_BIFLJDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ960_RS03470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139452.1Sequence record reported by the local genomic context database.
Genomic interval799 698-800 558 nt861 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span799 698-803 035 ntGCF_041447125::NZ_CP139452.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447125::NZ_CP139452.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139452.1All displayed genes belong to this local TCS context.
Neighborhood span799 698-803 035 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
799 698 nt803 035 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ960_RS03470GCF_041447125#SQ960_RS03470
RRNarLCurrent focus
799 698-800 558 nt · Reverse (-)
SQ960_RS03475GCF_041447125#SQ960_RS03475
HKClassic
800 642-803 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS04050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590486
Simplified PFAM architecture for RROC_0590486
PFAM domain coverage: 183 / 286 aa (64.0%)
1 aa286 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-135] | GerE[225-280]
- Domain count: 2
- Matched identifier: RROC_0590486
- Positioned domains: Response_reg 9-135 ; Response_reg 9-135 ; GerE 225-280 ; GerE 225-280
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS04050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447125
Assembly2021S6-1 · Complete Genomehaploid
Genome composition2 482 096 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key