1 HisKA_3#1
216-280 aa · 65 aa · 14.5% of protein
Raw token
HisKA_3:216:0.0000000000000157:280:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RZC77_RS00600
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_041357755
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041357755#RZC77_RS00600Stable P2CS identifier used across views.
GenomeGCF_041357755Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
326-435 aa · 110 aa · 24.5% of protein
Raw token
HATPase_c:326:0.0000000394:435:112:109- Raw architecture: HisKA_3:216:0.0000000000000157:280:65:68#HATPase_c:326:0.0000000394:435:112:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041357755::NZ_JAWNGD010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144392-146400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRZC77_00595RefSeq proteinWP_370941445.1
Context group ID
GCF_041357755::NZ_JAWNGD010000001.1::G00001Context members
RZC77_RS00600RZC77_RS00605
Partner locus tags
RZC77_RS00600RZC77_RS00605
Partner old locus tags
RZC77_00595RZC77_00600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_370941445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRZC77_RS00600Primary locus identifier stored in the genes table.
Old locus tagRZC77_00595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWNGD010000001.1Sequence record reported by the local genomic context database.
Genomic interval144 392-145 741 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 392-146 400 ntGCF_041357755::NZ_JAWNGD010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041357755::NZ_JAWNGD010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWNGD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 392-146 400 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 392 nt146 400 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RZC77_RS00600GCF_041357755#RZC77_RS00600
HKClassicCurrent focus
144 392-145 741 nt · Forward (+)
RZC77_RS00605GCF_041357755#RZC77_RS00605
RRNarL
145 741-146 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041357755#RZC77_RS00600The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1985253
Simplified PFAM architecture for HKOC_1985253
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[216-281]
- Domain count: 1
- Matched identifier: HKOC_1985253
- Positioned domains: HisKA_3 216-281
Cluster members and taxonomy
Representative gene: GCF_041357755#RZC77_RS00600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_041357755
AssemblyASM4135775v1 · Contighaploid
Genome composition2 283 965 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key