1 HisKA#1
486-552 aa · 67 aa · 9.4% of protein
Raw token
HisKA:486:3.61e-16:552:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS14420
Histidine kinase, Classic
Anaerostipes hadrus · GCF_040929945
ClassHKTypeClassicLength711 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS14420Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length711 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 711 aa (22.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa711 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
598-691 aa · 94 aa · 13.2% of protein
Raw token
HATPase_c:598:0.00000000000000225:691:97:109- Raw architecture: HisKA:486:3.61e-16:552:67:64#HATPase_c:598:0.00000000000000225:691:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000059.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span395-3209Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000059.1::G00024Context members
AB5861_RS14420AB5861_RS14425
Partner locus tags
AB5861_RS14420AB5861_RS14425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368219252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS14420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000059.1Sequence record reported by the local genomic context database.
Genomic interval395-2 530 nt2 136 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span395-3 209 ntGCF_040929945::NZ_JBCOBJ010000059.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000059.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000059.1All displayed genes belong to this local TCS context.
Neighborhood span395-3 209 nt2 815 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
395 nt3 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS14420GCF_040929945#AB5861_RS14420
HKClassicCurrent focus
395-2 530 nt · Reverse (-)
AB5861_RS14425GCF_040929945#AB5861_RS14425
RROmpR
2 502-3 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040929945#AB5861_RS14420The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0750341
Simplified PFAM architecture for HKOC_0750341
PFAM domain coverage: 170 / 711 aa (23.9%)
1 aa711 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[487-552] | HATPase_c[598-701]
- Domain count: 2
- Matched identifier: HKOC_0750341
- Positioned domains: HisKA 487-552 ; HATPase_c 598-701
Cluster members and taxonomy
Representative gene: GCF_040929945#AB5861_RS14420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key