1 SBP_bac_3#1
22-238 aa · 217 aa · 26.7% of protein
Raw token
SBP_bac_3:22:1.57e-32:238:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS04530
Histidine kinase, Classic
Anaerostipes hadrus · GCF_040929945
ClassHKTypeClassicLength814 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS04530Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length814 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage610 / 814 aa (74.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa814 aa
Domain-by-domain annotation4 items
2 SBP_bac_3#2
260-464 aa · 205 aa · 25.2% of protein
Raw token
SBP_bac_3:260:0.000000000000093:464:220:2243 HisKA#3
549-617 aa · 69 aa · 8.5% of protein
Raw token
HisKA:549:1.75e-18:617:69:644 HATPase_c#4
663-781 aa · 119 aa · 14.6% of protein
Raw token
HATPase_c:663:2.58e-30:781:119:109- Raw architecture: SBP_bac_3:22:1.57e-32:238:227:224#SBP_bac_3:260:0.000000000000093:464:220:224#HisKA:549:1.75e-18:617:69:64#HATPase_c:663:2.58e-30:781:119:109
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000006.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107689-110540Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000006.1::G00005Context members
AB5861_RS04525AB5861_RS04530
Partner locus tags
AB5861_RS04525AB5861_RS04530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368218172.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS04530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval108 096-110 540 nt2 445 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 689-110 540 ntGCF_040929945::NZ_JBCOBJ010000006.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000006.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span107 689-110 540 nt2 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 689 nt110 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS04525GCF_040929945#AB5861_RS04525
RRCheY
107 689-108 117 nt · Reverse (-)
AB5861_RS04530GCF_040929945#AB5861_RS04530
HKClassicCurrent focus
108 096-110 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008416325#F2Y14_RS00395Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0512612
Simplified PFAM architecture for HKOC_0512612
PFAM domain coverage: 401 / 836 aa (48.0%)
1 aa836 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[45-260] | HisKA[571-639] | HATPase_c[686-801]
- Domain count: 3
- Matched identifier: HKOC_0512612
- Positioned domains: SBP_bac_3 45-260 ; HisKA 571-639 ; HATPase_c 686-801
Cluster members and taxonomy
Representative gene: GCF_008416325#F2Y14_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key