1 sCache_like#1
34-132 aa · 99 aa · 22.0% of protein
Raw token
sCache_like:34:0.0000000748:132:105:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS11680
Histidine kinase, Classic
Anaerostipes hadrus · GCF_040929945
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS11680Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage279 / 451 aa (61.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-292 aa · 67 aa · 14.9% of protein
Raw token
HisKA:226:5.25e-17:292:67:643 HATPase_c#3
336-448 aa · 113 aa · 25.1% of protein
Raw token
HATPase_c:336:1.2e-29:448:113:109- Raw architecture: sCache_like:34:0.0000000748:132:105:114#HisKA:226:5.25e-17:292:67:64#HATPase_c:336:1.2e-29:448:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000032.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8372-10404Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000032.1::G00017Context members
AB5861_RS11680AB5861_RS11685
Partner locus tags
AB5861_RS11680AB5861_RS11685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009203834.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C8E9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C8E9_ANAHADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS11680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000032.1Sequence record reported by the local genomic context database.
Genomic interval8 372-9 727 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 372-10 404 ntGCF_040929945::NZ_JBCOBJ010000032.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000032.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000032.1All displayed genes belong to this local TCS context.
Neighborhood span8 372-10 404 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 372 nt10 404 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS11680GCF_040929945#AB5861_RS11680
HKClassicCurrent focus
8 372-9 727 nt · Reverse (-)
AB5861_RS11685GCF_040929945#AB5861_RS11685
RROmpR
9 724-10 404 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1937169
Simplified PFAM architecture for HKOC_1937169
PFAM domain coverage: 175 / 452 aa (38.7%)
1 aa452 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[226-291] | HATPase_c[339-447]
- Domain count: 2
- Matched identifier: HKOC_1937169
- Positioned domains: HisKA 226-291 ; HATPase_c 339-447
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key