1 Response_reg#1
170-285 aa · 116 aa · 39.6% of protein
Raw token
Response_reg:170:1.89e-30:285:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS09540
Response regulator, unclassified
Anaerostipes hadrus · GCF_040929945
ClassRRTypeunclassifiedLength293 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040929945#AB5861_RS09540Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage116 / 293 aa (39.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:170:1.89e-30:285:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040929945::NZ_JBCOBJ010000021.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7607-8488Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000021.1::G00013Context members
AB5861_RS09540
Partner locus tags
AB5861_RS09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368218754.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS09540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000021.1Sequence record reported by the local genomic context database.
Genomic interval7 607-8 488 nt882 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 607-8 488 ntGCF_040929945::NZ_JBCOBJ010000021.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000021.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000021.1All displayed genes belong to this local TCS context.
Neighborhood span7 607-8 488 nt882 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 607 nt8 488 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5861_RS09540GCF_040929945#AB5861_RS09540
RRunclassifiedCurrent focus
7 607-8 488 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040929945#AB5861_RS09540The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0584199
Simplified PFAM architecture for RROC_0584199
PFAM domain coverage: 230 / 293 aa (78.5%)
1 aa293 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[31-145] | Response_reg[170-284]
- Domain count: 2
- Matched identifier: RROC_0584199
- Positioned domains: HATPase_c 31-145 ; Response_reg 170-284
Cluster members and taxonomy
Representative gene: GCF_040929945#AB5861_RS09540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key