1 HisKA#1
149-217 aa · 69 aa · 18.0% of protein
Raw token
HisKA:149:0.00000000000162:217:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS06670
Histidine kinase, Classic
Anaerostipes hadrus · GCF_040929945
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS06670Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 383 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
265-374 aa · 110 aa · 28.7% of protein
Raw token
HATPase_c:265:4.52e-23:374:111:109- Raw architecture: HisKA:149:0.00000000000162:217:69:64#HATPase_c:265:4.52e-23:374:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000011.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69033-70894Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000011.1::G00010Context members
AB5861_RS06670AB5861_RS06675
Partner locus tags
AB5861_RS06670AB5861_RS06675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392187.1Primary protein accession used for annex mappings.
UniProt accessionD4MY81Primary UniProt accession resolved in the annex database.
UniProt IDD4MY81_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS06670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000011.1Sequence record reported by the local genomic context database.
Genomic interval69 033-70 184 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 033-70 894 ntGCF_040929945::NZ_JBCOBJ010000011.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000011.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span69 033-70 894 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 033 nt70 894 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS06670GCF_040929945#AB5861_RS06670
HKClassicCurrent focus
69 033-70 184 nt · Forward (+)
AB5861_RS06675GCF_040929945#AB5861_RS06675
RROmpR
70 181-70 894 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS02470Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2582162
Simplified PFAM architecture for HKOC_2582162
PFAM domain coverage: 284 / 383 aa (74.2%)
1 aa383 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[16-123] | HisKA[149-216] | HATPase_c[266-373]
- Domain count: 3
- Matched identifier: HKOC_2582162
- Positioned domains: DUF4118 16-123 ; HisKA 149-216 ; HATPase_c 266-373
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key