1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:7.16e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS06590
Response regulator OmpR family
Anaerostipes hadrus · GCF_040929945
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS06590Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:1.26e-22:229:77:77- Raw architecture: Response_reg:6:7.16e-35:115:111:111#Trans_reg_C:153:1.26e-22:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000011.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50946-53613Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000011.1::G00009Context members
AB5861_RS06585AB5861_RS06590
Partner locus tags
AB5861_RS06585AB5861_RS06590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368218367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS06590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000011.1Sequence record reported by the local genomic context database.
Genomic interval52 915-53 613 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 946-53 613 ntGCF_040929945::NZ_JBCOBJ010000011.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000011.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span50 946-53 613 nt2 668 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 946 nt53 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS06585GCF_040929945#AB5861_RS06585
HKClassic
50 946-52 922 nt · Forward (+)
AB5861_RS06590GCF_040929945#AB5861_RS06590
RROmpRCurrent focus
52 915-53 613 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040929945#AB5861_RS06590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1150274
Simplified PFAM architecture for RROC_1150274
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1150274
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_040929945#AB5861_RS06590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key