1 HAMP#1
173-239 aa · 67 aa · 14.1% of protein
Raw token
HAMP:173:1.96e-16:239:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5861_RS05620
Histidine kinase, Classic
Anaerostipes hadrus · GCF_040929945
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040929945#AB5861_RS05620Stable P2CS identifier used across views.
GenomeGCF_040929945Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 475 aa (47.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-303 aa · 53 aa · 11.2% of protein
Raw token
HisKA:251:0.000000000197:303:53:643 HATPase_c#3
360-466 aa · 107 aa · 22.5% of protein
Raw token
HATPase_c:360:4.59e-30:466:107:109- Raw architecture: HAMP:173:1.96e-16:239:67:69#HisKA:251:0.000000000197:303:53:64#HATPase_c:360:4.59e-30:466:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040929945::NZ_JBCOBJ010000009.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8350-10433Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040929945::NZ_JBCOBJ010000009.1::G00008Context members
AB5861_RS05620AB5861_RS05625
Partner locus tags
AB5861_RS05620AB5861_RS05625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368218270.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5861_RS05620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOBJ010000009.1Sequence record reported by the local genomic context database.
Genomic interval8 350-9 777 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 350-10 433 ntGCF_040929945::NZ_JBCOBJ010000009.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040929945::NZ_JBCOBJ010000009.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOBJ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span8 350-10 433 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 350 nt10 433 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5861_RS05620GCF_040929945#AB5861_RS05620
HKClassicCurrent focus
8 350-9 777 nt · Reverse (-)
AB5861_RS05625GCF_040929945#AB5861_RS05625
RROmpR
9 774-10 433 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040929945#AB5861_RS05620The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1672121
Simplified PFAM architecture for HKOC_1672121
PFAM domain coverage: 212 / 475 aa (44.6%)
1 aa475 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-238] | HisKA[251-303] | HATPase_c[360-466]
- Domain count: 3
- Matched identifier: HKOC_1672121
- Positioned domains: HAMP 187-238 ; HisKA 251-303 ; HATPase_c 360-466
Cluster members and taxonomy
Representative gene: GCF_040929945#AB5861_RS05620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_040929945
AssemblyASM4092994v1 · Contighaploid
Genome composition2 974 216 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 46 · HK 22 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key