1 dCache_1#1
167-272 aa · 106 aa · 17.8% of protein
Raw token
dCache_1:167:0.0000293:272:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS05585
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS05585Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage354 / 594 aa (59.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
303-370 aa · 68 aa · 11.4% of protein
Raw token
HAMP:303:0.0000000000805:370:69:693 His_kinase#3
386-465 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:386:1.95e-28:465:80:804 HATPase_c#4
483-582 aa · 100 aa · 16.8% of protein
Raw token
HATPase_c:483:0.0000000103:582:109:109- Raw architecture: dCache_1:167:0.0000293:272:106:195#HAMP:303:0.0000000000805:370:69:69#His_kinase:386:1.95e-28:465:80:80#HATPase_c:483:0.0000000103:582:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000012.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42782-45781Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000012.1::G00022Context members
AB5805_RS05585AB5805_RS05590
Partner locus tags
AB5805_RS05585AB5805_RS05590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208205.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS05585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000012.1Sequence record reported by the local genomic context database.
Genomic interval42 782-44 566 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 782-45 781 ntGCF_040926725::NZ_JBCOHO010000012.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000012.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000012.1All displayed genes belong to this local TCS context.
Neighborhood span42 782-45 781 nt3 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 782 nt45 781 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS05585GCF_040926725#AB5805_RS05585
HKClassicCurrent focus
42 782-44 566 nt · Forward (+)
AB5805_RS05590GCF_040926725#AB5805_RS05590
RRunclassified
44 603-45 781 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS16505Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1091688
Simplified PFAM architecture for HKOC_1091688
PFAM domain coverage: 223 / 594 aa (37.5%)
1 aa594 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-370] | His_kinase[387-463] | HATPase_c[484-582]
- Domain count: 3
- Matched identifier: HKOC_1091688
- Positioned domains: HAMP 324-370 ; His_kinase 387-463 ; HATPase_c 484-582
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS16505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key