1 HAMP#1
188-254 aa · 67 aa · 13.6% of protein
Raw token
HAMP:188:0.0000000000849:254:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS00680
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS00680Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 493 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:285:5.8e-30:364:80:803 HATPase_c#3
383-490 aa · 108 aa · 21.9% of protein
Raw token
HATPase_c:383:0.000000000000189:490:108:109- Raw architecture: HAMP:188:0.0000000000849:254:67:69#His_kinase:285:5.8e-30:364:80:80#HATPase_c:383:0.000000000000189:490:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30384-33487Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000002.1::G00004Context members
AB5805_RS00675AB5805_RS00680
Partner locus tags
AB5805_RS00675AB5805_RS00680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118339261.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS00680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000002.1Sequence record reported by the local genomic context database.
Genomic interval32 006-33 487 nt1 482 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 384-33 487 ntGCF_040926725::NZ_JBCOHO010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span30 384-33 487 nt3 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 384 nt33 487 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS00675GCF_040926725#AB5805_RS00675
RRunclassified
30 384-31 979 nt · Reverse (-)
AB5805_RS00680GCF_040926725#AB5805_RS00680
HKClassicCurrent focus
32 006-33 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299975#G4425_RS01230Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1516915
Simplified PFAM architecture for HKOC_1516915
PFAM domain coverage: 233 / 493 aa (47.3%)
1 aa493 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-254] | His_kinase[285-361] | HATPase_c[384-490]
- Domain count: 3
- Matched identifier: HKOC_1516915
- Positioned domains: HAMP 206-254 ; His_kinase 285-361 ; HATPase_c 384-490
Cluster members and taxonomy
Representative gene: GCF_013299975#G4425_RS01230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key