1 dCache_1#1
48-289 aa · 242 aa · 40.3% of protein
Raw token
dCache_1:48:5.95e-18:289:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS05255
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS05255Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage496 / 601 aa (82.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation4 items
2 HAMP#2
308-377 aa · 70 aa · 11.6% of protein
Raw token
HAMP:308:0.00000000000000156:377:70:693 His_kinase#3
393-471 aa · 79 aa · 13.1% of protein
Raw token
His_kinase:393:5.4e-37:471:79:804 HATPase_c#4
487-591 aa · 105 aa · 17.5% of protein
Raw token
HATPase_c:487:0.0000000000000125:591:109:109- Raw architecture: dCache_1:48:5.95e-18:289:246:195#HAMP:308:0.00000000000000156:377:70:69#His_kinase:393:5.4e-37:471:79:80#HATPase_c:487:0.0000000000000125:591:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000011.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70017-73438Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000011.1::G00020Context members
AB5805_RS05250AB5805_RS05255
Partner locus tags
AB5805_RS05250AB5805_RS05255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022380184.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TEV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TEV0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS05255Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000011.1Sequence record reported by the local genomic context database.
Genomic interval71 633-73 438 nt1 806 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 017-73 438 ntGCF_040926725::NZ_JBCOHO010000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000011.1All displayed genes belong to this local TCS context.
Neighborhood span70 017-73 438 nt3 422 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 017 nt73 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS05250GCF_040926725#AB5805_RS05250
RRunclassified
70 017-71 636 nt · Forward (+)
AB5805_RS05255GCF_040926725#AB5805_RS05255
HKClassicCurrent focus
71 633-73 438 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS11455Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1047992
Simplified PFAM architecture for HKOC_1047992
PFAM domain coverage: 479 / 601 aa (79.7%)
1 aa601 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-289] | HAMP[324-377] | His_kinase[393-471] | HATPase_c[487-591]
- Domain count: 4
- Matched identifier: HKOC_1047992
- Positioned domains: dCache_1 49-289 ; HAMP 324-377 ; His_kinase 393-471 ; HATPase_c 487-591
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS11455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key