1 HisKA#1
85-146 aa · 62 aa · 20.5% of protein
Raw token
HisKA:85:0.0000000000329:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS04950
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS04950Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 302 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-300 aa · 110 aa · 36.4% of protein
Raw token
HATPase_c:191:2.15e-29:300:110:109- Raw architecture: HisKA:85:0.0000000000329:146:62:64#HATPase_c:191:2.15e-29:300:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000011.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8522-10110Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000011.1::G00018Context members
AB5805_RS04945AB5805_RS04950
Partner locus tags
AB5805_RS04945AB5805_RS04950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059973.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TN67Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TN67_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS04950Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000011.1Sequence record reported by the local genomic context database.
Genomic interval9 202-10 110 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 522-10 110 ntGCF_040926725::NZ_JBCOHO010000011.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000011.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000011.1All displayed genes belong to this local TCS context.
Neighborhood span8 522-10 110 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 522 nt10 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS04945GCF_040926725#AB5805_RS04945
RROmpR
8 522-9 205 nt · Forward (+)
AB5805_RS04950GCF_040926725#AB5805_RS04950
HKClassicCurrent focus
9 202-10 110 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS09890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884788
Simplified PFAM architecture for HKOC_2884788
PFAM domain coverage: 171 / 302 aa (56.6%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-299]
- Domain count: 2
- Matched identifier: HKOC_2884788
- Positioned domains: HisKA 85-146 ; HATPase_c 191-299
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS09890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key