1 His_kinase#1
124-203 aa · 80 aa · 23.3% of protein
Raw token
His_kinase:124:9.29e-34:203:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS03235
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS03235Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 344 aa (54.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-334 aa · 109 aa · 31.7% of protein
Raw token
HATPase_c:226:0.000000000000137:334:111:109- Raw architecture: His_kinase:124:9.29e-34:203:80:80#HATPase_c:226:0.000000000000137:334:111:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000007.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13192-15870Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000007.1::G00013Context members
AB5805_RS03230AB5805_RS03235
Partner locus tags
AB5805_RS03230AB5805_RS03235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119243648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS03235Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000007.1Sequence record reported by the local genomic context database.
Genomic interval14 836-15 870 nt1 035 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 192-15 870 ntGCF_040926725::NZ_JBCOHO010000007.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000007.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000007.1All displayed genes belong to this local TCS context.
Neighborhood span13 192-15 870 nt2 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 192 nt15 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS03230GCF_040926725#AB5805_RS03230
RRunclassified
13 192-14 811 nt · Forward (+)
AB5805_RS03235GCF_040926725#AB5805_RS03235
HKClassicCurrent focus
14 836-15 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301985#G4972_RS07960Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2824946
Simplified PFAM architecture for HKOC_2824946
PFAM domain coverage: 190 / 344 aa (55.2%)
1 aa344 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[124-203] | HATPase_c[225-334]
- Domain count: 2
- Matched identifier: HKOC_2824946
- Positioned domains: His_kinase 124-203 ; HATPase_c 225-334
Cluster members and taxonomy
Representative gene: GCF_013301985#G4972_RS07960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key