1 Response_reg#1
3-110 aa · 108 aa · 20.6% of protein
Raw token
Response_reg:3:5.23e-29:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS03195
Response regulator, unclassified
Blautia wexlerae · GCF_040926725
ClassRRTypeunclassifiedLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS03195Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 524 aa (27.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
482-519 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:482:0.0000000171:519:38:42- Raw architecture: Response_reg:3:5.23e-29:110:108:111#HTH_AraC:482:0.0000000171:519:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000007.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2712-6039Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000007.1::G00012Context members
AB5805_RS03190AB5805_RS03195
Partner locus tags
AB5805_RS03190AB5805_RS03195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_062808271.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS03195Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000007.1Sequence record reported by the local genomic context database.
Genomic interval4 465-6 039 nt1 575 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 712-6 039 ntGCF_040926725::NZ_JBCOHO010000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000007.1All displayed genes belong to this local TCS context.
Neighborhood span2 712-6 039 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 712 nt6 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS03190GCF_040926725#AB5805_RS03190
HKClassic
2 712-4 487 nt · Forward (+)
AB5805_RS03195GCF_040926725#AB5805_RS03195
RRunclassifiedCurrent focus
4 465-6 039 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301985#G4972_RS07925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0120738
Simplified PFAM architecture for RROC_0120738
PFAM domain coverage: 189 / 524 aa (36.1%)
1 aa524 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[442-519]
- Domain count: 2
- Matched identifier: RROC_0120738
- Positioned domains: Response_reg 3-113 ; HTH_18 442-519
Cluster members and taxonomy
Representative gene: GCF_013301985#G4972_RS07925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key