1 HAMP#1
184-251 aa · 68 aa · 14.1% of protein
Raw token
HAMP:184:0.000000000441:251:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS02930
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926725#AB5805_RS02930Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 483 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-321 aa · 66 aa · 13.7% of protein
Raw token
HisKA:256:0.0000000000057:321:66:643 HATPase_c#3
369-478 aa · 110 aa · 22.8% of protein
Raw token
HATPase_c:369:1.09e-29:478:110:109- Raw architecture: HAMP:184:0.000000000441:251:68:69#HisKA:256:0.0000000000057:321:66:64#HATPase_c:369:1.09e-29:478:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926725::NZ_JBCOHO010000006.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span43536-44987Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000006.1::G00011Context members
AB5805_RS02930
Partner locus tags
AB5805_RS02930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208146.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS02930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000006.1Sequence record reported by the local genomic context database.
Genomic interval43 536-44 987 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 536-44 987 ntGCF_040926725::NZ_JBCOHO010000006.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000006.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000006.1All displayed genes belong to this local TCS context.
Neighborhood span43 536-44 987 nt1 452 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 536 nt44 987 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5805_RS02930GCF_040926725#AB5805_RS02930
HKClassicCurrent focus
43 536-44 987 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS02695Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1600579
Simplified PFAM architecture for HKOC_1600579
PFAM domain coverage: 176 / 483 aa (36.4%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[256-321] | HATPase_c[369-478]
- Domain count: 2
- Matched identifier: HKOC_1600579
- Positioned domains: HisKA 256-321 ; HATPase_c 369-478
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS02695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key