1 HisKA#1
57-118 aa · 62 aa · 23.0% of protein
Raw token
HisKA:57:0.0000000000624:118:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5791_RS08035
Histidine kinase, Classic
Blautia wexlerae · GCF_040926645
ClassHKTypeClassicLength269 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926645#AB5791_RS08035Stable P2CS identifier used across views.
GenomeGCF_040926645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 269 aa (60.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-268 aa · 100 aa · 37.2% of protein
Raw token
HATPase_c:169:1.9e-31:268:100:109- Raw architecture: HisKA:57:0.0000000000624:118:62:64#HATPase_c:169:1.9e-31:268:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926645::NZ_JBCOHQ010000025.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39248-40817Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926645::NZ_JBCOHQ010000025.1::G00031Context members
AB5791_RS08035AB5791_RS08040
Partner locus tags
AB5791_RS08035AB5791_RS08040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330381066.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5791_RS08035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHQ010000025.1Sequence record reported by the local genomic context database.
Genomic interval39 248-40 057 nt810 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 248-40 817 ntGCF_040926645::NZ_JBCOHQ010000025.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926645::NZ_JBCOHQ010000025.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHQ010000025.1All displayed genes belong to this local TCS context.
Neighborhood span39 248-40 817 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 248 nt40 817 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5791_RS08035GCF_040926645#AB5791_RS08035
HKClassicCurrent focus
39 248-40 057 nt · Reverse (-)
AB5791_RS08040GCF_040926645#AB5791_RS08040
RROmpR
40 140-40 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916025#AB5251_RS07765Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888400
Simplified PFAM architecture for HKOC_2888400
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-298]
- Domain count: 2
- Matched identifier: HKOC_2888400
- Positioned domains: HisKA 86-148 ; HATPase_c 198-298
Cluster members and taxonomy
Representative gene: GCF_040916025#AB5251_RS07765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926645
AssemblyASM4092664v1 · Scaffoldhaploid
Genome composition4 146 916 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 60 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key