1 Response_reg#1
4-117 aa · 114 aa · 33.8% of protein
Raw token
Response_reg:4:5.74e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5791_RS00900
Response regulator, unclassified
Blautia wexlerae · GCF_040926645
ClassRRTypeunclassifiedLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926645#AB5791_RS00900Stable P2CS identifier used across views.
GenomeGCF_040926645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 337 aa (33.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.74e-24:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926645::NZ_JBCOHQ010000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67361-70191Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926645::NZ_JBCOHQ010000002.1::G00003Context members
AB5791_RS00895AB5791_RS00900
Partner locus tags
AB5791_RS00895AB5791_RS00900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368227475.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5791_RS00900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval69 180-70 191 nt1 012 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 361-70 191 ntGCF_040926645::NZ_JBCOHQ010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926645::NZ_JBCOHQ010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span67 361-70 191 nt2 831 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 361 nt70 191 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5791_RS00895GCF_040926645#AB5791_RS00895
HKClassic
67 361-69 205 nt · Forward (+)
AB5791_RS00900GCF_040926645#AB5791_RS00900
RRunclassifiedCurrent focus
69 180-70 191 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS00900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0508274
Simplified PFAM architecture for RROC_0508274
PFAM domain coverage: 241 / 337 aa (71.5%)
1 aa337 aa
Response_regGGDEF_2
- Simplified architecture: Response_reg + GGDEF_2
- Raw architecture: Response_reg[4-116] | GGDEF_2[163-290]
- Domain count: 2
- Matched identifier: RROC_0508274
- Positioned domains: Response_reg 4-116 ; GGDEF_2 163-290
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS00900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926645
AssemblyASM4092664v1 · Scaffoldhaploid
Genome composition4 146 916 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 60 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key