1 HAMP#1
53-122 aa · 70 aa · 20.1% of protein
Raw token
HAMP:53:0.000000000000178:122:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5791_RS04405
Histidine kinase, Classic
Blautia wexlerae · GCF_040926645
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926645#AB5791_RS04405Stable P2CS identifier used across views.
GenomeGCF_040926645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 349 aa (72.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation3 items
2 His_kinase#2
137-215 aa · 79 aa · 22.6% of protein
Raw token
His_kinase:137:7.54e-30:215:80:803 HATPase_c#3
234-337 aa · 104 aa · 29.8% of protein
Raw token
HATPase_c:234:0.000000000000783:337:108:109- Raw architecture: HAMP:53:0.000000000000178:122:70:69#His_kinase:137:7.54e-30:215:80:80#HATPase_c:234:0.000000000000783:337:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926645::NZ_JBCOHQ010000010.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63890-64941Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926645::NZ_JBCOHQ010000010.1::G00021Context members
AB5791_RS04405
Partner locus tags
AB5791_RS04405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368227553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5791_RS04405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval63 890-64 941 nt1 052 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 890-64 941 ntGCF_040926645::NZ_JBCOHQ010000010.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926645::NZ_JBCOHQ010000010.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span63 890-64 941 nt1 052 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 890 nt64 941 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5791_RS04405GCF_040926645#AB5791_RS04405
HKClassicCurrent focus
63 890-64 941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020593505#LJE09_RS05920Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1083793
Simplified PFAM architecture for HKOC_1083793
PFAM domain coverage: 232 / 595 aa (39.0%)
1 aa595 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-367] | His_kinase[383-461] | HATPase_c[481-583]
- Domain count: 3
- Matched identifier: HKOC_1083793
- Positioned domains: HAMP 318-367 ; His_kinase 383-461 ; HATPase_c 481-583
Cluster members and taxonomy
Representative gene: GCF_020593505#LJE09_RS05920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926645
AssemblyASM4092664v1 · Scaffoldhaploid
Genome composition4 146 916 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 60 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key