1 Response_reg#1
5-117 aa · 113 aa · 59.2% of protein
Raw token
Response_reg:5:4.99e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5791_RS04315
Response regulator, unclassified
Blautia wexlerae · GCF_040926645
ClassRRTypeunclassifiedLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926645#AB5791_RS04315Stable P2CS identifier used across views.
GenomeGCF_040926645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 191 aa (59.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:4.99e-30:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926645::NZ_JBCOHQ010000010.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42339-44746Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926645::NZ_JBCOHQ010000010.1::G00019Context members
AB5791_RS04310AB5791_RS04315
Partner locus tags
AB5791_RS04310AB5791_RS04315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5791_RS04315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval44 171-44 746 nt576 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 339-44 746 ntGCF_040926645::NZ_JBCOHQ010000010.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926645::NZ_JBCOHQ010000010.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span42 339-44 746 nt2 408 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 339 nt44 746 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5791_RS04310GCF_040926645#AB5791_RS04310
HKClassic
42 339-44 171 nt · Forward (+)
AB5791_RS04315GCF_040926645#AB5791_RS04315
RRunclassifiedCurrent focus
44 171-44 746 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS04315The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2169853
Simplified PFAM architecture for RROC_2169853
PFAM domain coverage: 111 / 191 aa (58.1%)
1 aa191 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2169853
- Positioned domains: Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS04315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926645
AssemblyASM4092664v1 · Scaffoldhaploid
Genome composition4 146 916 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 60 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key