1 HAMP#1
288-358 aa · 71 aa · 12.3% of protein
Raw token
HAMP:288:0.0000000000163:358:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5791_RS01040
Histidine kinase, Classic
Blautia wexlerae · GCF_040926645
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926645#AB5791_RS01040Stable P2CS identifier used across views.
GenomeGCF_040926645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 577 aa (44.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-453 aa · 81 aa · 14.0% of protein
Raw token
His_kinase:373:2.43e-23:453:81:803 HATPase_c#3
471-573 aa · 103 aa · 17.9% of protein
Raw token
HATPase_c:471:0.000000000683:573:112:109- Raw architecture: HAMP:288:0.0000000000163:358:71:69#His_kinase:373:2.43e-23:453:81:80#HATPase_c:471:0.000000000683:573:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926645::NZ_JBCOHQ010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94300-97190Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926645::NZ_JBCOHQ010000002.1::G00004Context members
AB5791_RS01035AB5791_RS01040
Partner locus tags
AB5791_RS01035AB5791_RS01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208083.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5791_RS01040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval95 457-97 190 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 300-97 190 ntGCF_040926645::NZ_JBCOHQ010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926645::NZ_JBCOHQ010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span94 300-97 190 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 300 nt97 190 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5791_RS01035GCF_040926645#AB5791_RS01035
RRunclassified
94 300-95 385 nt · Reverse (-)
AB5791_RS01040GCF_040926645#AB5791_RS01040
HKClassicCurrent focus
95 457-97 190 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS01040The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1181697
Simplified PFAM architecture for HKOC_1181697
PFAM domain coverage: 230 / 577 aa (39.9%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[307-357] | His_kinase[373-451] | HATPase_c[473-572]
- Domain count: 3
- Matched identifier: HKOC_1181697
- Positioned domains: HAMP 307-357 ; His_kinase 373-451 ; HATPase_c 473-572
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS01040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926645
AssemblyASM4092664v1 · Scaffoldhaploid
Genome composition4 146 916 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 60 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key