1 HAMP#1
131-196 aa · 66 aa · 14.7% of protein
Raw token
HAMP:131:0.00000000172:196:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5793_RS10965
Histidine kinase, Classic
Clostridium paraputrificum · GCF_040926565
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926565#AB5793_RS10965Stable P2CS identifier used across views.
GenomeGCF_040926565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 450 aa (54.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
223-289 aa · 67 aa · 14.9% of protein
Raw token
HisKA:223:0.00000000000000283:289:67:643 HATPase_c#3
335-446 aa · 112 aa · 24.9% of protein
Raw token
HATPase_c:335:2.96e-20:446:113:109- Raw architecture: HAMP:131:0.00000000172:196:66:69#HisKA:223:0.00000000000000283:289:67:64#HATPase_c:335:2.96e-20:446:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926565::NZ_JBCOHX010000098.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span431-1784Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926565::NZ_JBCOHX010000098.1::G00024Context members
AB5793_RS10965
Partner locus tags
AB5793_RS10965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368259965.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5793_RS10965Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHX010000098.1Sequence record reported by the local genomic context database.
Genomic interval431-1 784 nt1 354 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span431-1 784 ntGCF_040926565::NZ_JBCOHX010000098.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926565::NZ_JBCOHX010000098.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHX010000098.1All displayed genes belong to this local TCS context.
Neighborhood span431-1 784 nt1 354 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
431 nt1 784 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5793_RS10965GCF_040926565#AB5793_RS10965
HKClassicCurrent focus
431-1 784 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0107025Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487275
Simplified PFAM architecture for HKOC_1487275
PFAM domain coverage: 175 / 498 aa (35.1%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[271-337] | HATPase_c[384-491]
- Domain count: 2
- Matched identifier: HKOC_1487275
- Positioned domains: HisKA 271-337 ; HATPase_c 384-491
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0107025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_040926565
AssemblyASM4092656v1 · Scaffoldhaploid
Genome composition3 529 111 bp · 30,5% GCClostridium paraputrificum
Signal transduction countsGenes 65 · HK 31 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key