1 HisKA#1
194-260 aa · 67 aa · 16.2% of protein
Raw token
HisKA:194:0.0000000000128:260:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5793_RS10460
Histidine kinase, Classic
Clostridium paraputrificum · GCF_040926565
ClassHKTypeClassicLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926565#AB5793_RS10460Stable P2CS identifier used across views.
GenomeGCF_040926565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 414 aa (41.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-411 aa · 106 aa · 25.6% of protein
Raw token
HATPase_c:306:9.89e-27:411:106:109- Raw architecture: HisKA:194:0.0000000000128:260:67:64#HATPase_c:306:9.89e-27:411:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926565::NZ_JBCOHX010000090.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1206-3136Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926565::NZ_JBCOHX010000090.1::G00022Context members
AB5793_RS10455AB5793_RS10460
Partner locus tags
AB5793_RS10455AB5793_RS10460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098737.1Primary protein accession used for annex mappings.
UniProt accessionA0A174U6T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174U6T5_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5793_RS10460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHX010000090.1Sequence record reported by the local genomic context database.
Genomic interval1 892-3 136 nt1 245 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 206-3 136 ntGCF_040926565::NZ_JBCOHX010000090.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926565::NZ_JBCOHX010000090.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHX010000090.1All displayed genes belong to this local TCS context.
Neighborhood span1 206-3 136 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 206 nt3 136 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5793_RS10455GCF_040926565#AB5793_RS10455
RROmpR
1 206-1 892 nt · Forward (+)
AB5793_RS10460GCF_040926565#AB5793_RS10460
HKClassicCurrent focus
1 892-3 136 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0111595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2319792
Simplified PFAM architecture for HKOC_2319792
PFAM domain coverage: 173 / 414 aa (41.8%)
1 aa414 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[194-260] | HATPase_c[306-411]
- Domain count: 2
- Matched identifier: HKOC_2319792
- Positioned domains: HisKA 194-260 ; HATPase_c 306-411
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0111595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_040926565
AssemblyASM4092656v1 · Scaffoldhaploid
Genome composition3 529 111 bp · 30,5% GCClostridium paraputrificum
Signal transduction countsGenes 65 · HK 31 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key