1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:7.01e-16:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5464_RS01950
Response regulator NarL family
Bifidobacterium catenulatum · GCF_040921565
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040921565#AB5464_RS01950Stable P2CS identifier used across views.
GenomeGCF_040921565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 218 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:155:9.14e-19:211:57:58- Raw architecture: Response_reg:13:7.01e-16:126:115:111#HTH_LUXR:155:9.14e-19:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040921565::NZ_JBCORM010000002.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121100-121756Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921565::NZ_JBCORM010000002.1::G00001Context members
AB5464_RS01950
Partner locus tags
AB5464_RS01950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_099571613.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5ZW54Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5ZW54_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5464_RS01950Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORM010000002.1Sequence record reported by the local genomic context database.
Genomic interval121 100-121 756 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 100-121 756 ntGCF_040921565::NZ_JBCORM010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921565::NZ_JBCORM010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORM010000002.1All displayed genes belong to this local TCS context.
Neighborhood span121 100-121 756 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 100 nt121 756 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5464_RS01950GCF_040921565#AB5464_RS01950
RRNarLCurrent focus
121 100-121 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS06460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0681418
Simplified PFAM architecture for RROC_0681418
PFAM domain coverage: 167 / 255 aa (65.5%)
1 aa255 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[50-162] | GerE[194-247]
- Domain count: 2
- Matched identifier: RROC_0681418
- Positioned domains: Response_reg 50-162 ; Response_reg 50-162 ; GerE 194-247 ; GerE 194-247
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS06460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040921565
AssemblyASM4092156v1 · Scaffoldhaploid
Genome composition2 039 479 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key