1 Response_reg#1
50-163 aa · 114 aa · 44.7% of protein
Raw token
Response_reg:50:6.77e-16:163:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE168_RS06460
Response regulator NarL family
Bifidobacterium sp. N5G01 · GCF_002742425
ClassRRTypeNarLLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002742425#CE168_RS06460Stable P2CS identifier used across views.
GenomeGCF_002742425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 255 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
192-248 aa · 57 aa · 22.4% of protein
Raw token
HTH_LUXR:192:8.03e-19:248:57:58- Raw architecture: Response_reg:50:6.77e-16:163:115:111#HTH_LUXR:192:8.03e-19:248:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002742425::NZ_NJNP01000003.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span182611-183378Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE168_06420RefSeq proteinWP_236824351.1
Context group ID
GCF_002742425::NZ_NJNP01000003.1::G00011Context members
CE168_RS06460
Partner locus tags
CE168_RS06460
Partner old locus tags
CE168_06420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236824351.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE168_RS06460Primary locus identifier stored in the genes table.
Old locus tagCE168_06420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNP01000003.1Sequence record reported by the local genomic context database.
Genomic interval182 611-183 378 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span182 611-183 378 ntGCF_002742425::NZ_NJNP01000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002742425::NZ_NJNP01000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNP01000003.1All displayed genes belong to this local TCS context.
Neighborhood span182 611-183 378 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 611 nt183 378 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE168_RS06460GCF_002742425#CE168_RS06460
RRNarLCurrent focus
182 611-183 378 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS06460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0681418
Simplified PFAM architecture for RROC_0681418
PFAM domain coverage: 167 / 255 aa (65.5%)
1 aa255 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[50-162] | GerE[194-247]
- Domain count: 2
- Matched identifier: RROC_0681418
- Positioned domains: Response_reg 50-162 ; Response_reg 50-162 ; GerE 194-247 ; GerE 194-247
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS06460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 013 021 · GCF_002742425
AssemblyASM274242v1 · Contighaploid
Genome composition2 121 628 bp · 56,0% GCBifidobacterium sp. N5G01
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key