1 Response_reg#1
13-122 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:13:5.31e-37:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5341_RS02080
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_040917845
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040917845#AB5341_RS02080Stable P2CS identifier used across views.
GenomeGCF_040917845Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 244 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-239 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:163:5.79e-31:239:77:77- Raw architecture: Response_reg:13:5.31e-37:122:111:111#Trans_reg_C:163:5.79e-31:239:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040917845::NZ_JBCOYV010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103044-105428Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040917845::NZ_JBCOYV010000002.1::G00005Context members
AB5341_RS02075AB5341_RS02080
Partner locus tags
AB5341_RS02075AB5341_RS02080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_438264573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5341_RS02080Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOYV010000002.1Sequence record reported by the local genomic context database.
Genomic interval104 733-105 428 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 044-105 428 ntGCF_040917845::NZ_JBCOYV010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040917845::NZ_JBCOYV010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOYV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span103 044-105 428 nt2 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 044 nt105 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5341_RS02075GCF_040917845#AB5341_RS02075
HKClassic
103 044-104 723 nt · Reverse (-)
AB5341_RS02080GCF_040917845#AB5341_RS02080
RROmpRCurrent focus
104 733-105 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015548665#I1929_RS03200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0813976
Simplified PFAM architecture for RROC_0813976
PFAM domain coverage: 184 / 244 aa (75.4%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[166-239]
- Domain count: 2
- Matched identifier: RROC_0813976
- Positioned domains: Response_reg 13-122 ; Trans_reg_C 166-239
Cluster members and taxonomy
Representative gene: GCF_015548665#I1929_RS03200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040917845
AssemblyASM4091784v1 · Scaffoldhaploid
Genome composition2 352 088 bp · 58,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key