1 HAMP#1
176-245 aa · 70 aa · 13.2% of protein
Raw token
HAMP:176:0.0000000000000234:245:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5341_RS02075
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_040917845
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040917845#AB5341_RS02075Stable P2CS identifier used across views.
GenomeGCF_040917845Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 530 aa (47.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-323 aa · 68 aa · 12.8% of protein
Raw token
HisKA:256:7.55e-16:323:68:643 HATPase_c#3
370-480 aa · 111 aa · 20.9% of protein
Raw token
HATPase_c:370:1.61e-31:480:111:109- Raw architecture: HAMP:176:0.0000000000000234:245:70:69#HisKA:256:7.55e-16:323:68:64#HATPase_c:370:1.61e-31:480:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040917845::NZ_JBCOYV010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103044-105428Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040917845::NZ_JBCOYV010000002.1::G00005Context members
AB5341_RS02075AB5341_RS02080
Partner locus tags
AB5341_RS02075AB5341_RS02080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373175731.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5341_RS02075Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOYV010000002.1Sequence record reported by the local genomic context database.
Genomic interval103 044-104 723 nt1 680 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 044-105 428 ntGCF_040917845::NZ_JBCOYV010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040917845::NZ_JBCOYV010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOYV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span103 044-105 428 nt2 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 044 nt105 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5341_RS02075GCF_040917845#AB5341_RS02075
HKClassicCurrent focus
103 044-104 723 nt · Reverse (-)
AB5341_RS02080GCF_040917845#AB5341_RS02080
RROmpR
104 733-105 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964238785#ACESXB_RS00360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1264722
Simplified PFAM architecture for HKOC_1264722
PFAM domain coverage: 229 / 559 aa (41.0%)
1 aa559 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[223-273] | HisKA[285-352] | HATPase_c[399-508]
- Domain count: 3
- Matched identifier: HKOC_1264722
- Positioned domains: HAMP 223-273 ; HisKA 285-352 ; HATPase_c 399-508
Cluster members and taxonomy
Representative gene: GCF_964238785#ACESXB_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040917845
AssemblyASM4091784v1 · Scaffoldhaploid
Genome composition2 352 088 bp · 58,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key