1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000527:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5302_RS06890
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_040917325
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040917325#AB5302_RS06890Stable P2CS identifier used across views.
GenomeGCF_040917325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:1.01e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000527:249:66:64#HATPase_c:312:1.01e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040917325::NZ_JBCOZW010000008.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6253-8368Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040917325::NZ_JBCOZW010000008.1::G00006Context members
AB5302_RS06885AB5302_RS06890
Partner locus tags
AB5302_RS06885AB5302_RS06890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_195223355.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5ZYF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5ZYF8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5302_RS06890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOZW010000008.1Sequence record reported by the local genomic context database.
Genomic interval7 022-8 368 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 253-8 368 ntGCF_040917325::NZ_JBCOZW010000008.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040917325::NZ_JBCOZW010000008.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOZW010000008.1All displayed genes belong to this local TCS context.
Neighborhood span6 253-8 368 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 253 nt8 368 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5302_RS06885GCF_040917325#AB5302_RS06885
RROmpR
6 253-6 957 nt · Reverse (-)
AB5302_RS06890GCF_040917325#AB5302_RS06890
HKClassicCurrent focus
7 022-8 368 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015548935#I1926_RS01490Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1992612
Simplified PFAM architecture for HKOC_1992612
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1992612
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_015548935#I1926_RS01490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040917325
AssemblyASM4091732v1 · Scaffoldhaploid
Genome composition2 214 926 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key