1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000527:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I1926_RS01490
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_015548935
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015548935#I1926_RS01490Stable P2CS identifier used across views.
GenomeGCF_015548935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:1.01e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000527:249:66:64#HATPase_c:312:1.01e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015548935::NZ_JADMXZ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span380866-382981Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015548935::NZ_JADMXZ010000001.1::G00002Context members
I1926_RS01490I1926_RS01495
Partner locus tags
I1926_RS01490I1926_RS01495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_195223355.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5ZYF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5ZYF8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI1926_RS01490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMXZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval380 866-382 212 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span380 866-382 981 ntGCF_015548935::NZ_JADMXZ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015548935::NZ_JADMXZ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMXZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span380 866-382 981 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
380 866 nt382 981 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I1926_RS01490GCF_015548935#I1926_RS01490
HKClassicCurrent focus
380 866-382 212 nt · Forward (+)
I1926_RS01495GCF_015548935#I1926_RS01495
RROmpR
382 277-382 981 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015548935#I1926_RS01490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1992612
Simplified PFAM architecture for HKOC_1992612
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1992612
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_015548935#I1926_RS01490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_015548935
AssemblyASM1554893v1 · Scaffoldhaploid
Genome composition2 153 693 bp · 56,5% GCBifidobacterium catenulatum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key