1 HisKA_3#1
214-276 aa · 63 aa · 7.5% of protein
Raw token
HisKA_3:214:1.95e-18:276:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5274_RS07255
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_040916565
ClassHKTypeClassicLength841 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916565#AB5274_RS07255Stable P2CS identifier used across views.
GenomeGCF_040916565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length841 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 841 aa (17.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa841 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-411 aa · 87 aa · 10.3% of protein
Raw token
HATPase_c:325:0.000000000000129:411:104:109- Raw architecture: HisKA_3:214:1.95e-18:276:63:68#HATPase_c:325:0.000000000000129:411:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916565::NZ_JBCPBI010000029.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24572-27921Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916565::NZ_JBCPBI010000029.1::G00009Context members
AB5274_RS07250AB5274_RS07255
Partner locus tags
AB5274_RS07250AB5274_RS07255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368200942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5274_RS07255Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPBI010000029.1Sequence record reported by the local genomic context database.
Genomic interval25 394-27 921 nt2 528 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 572-27 921 ntGCF_040916565::NZ_JBCPBI010000029.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916565::NZ_JBCPBI010000029.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPBI010000029.1All displayed genes belong to this local TCS context.
Neighborhood span24 572-27 921 nt3 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 572 nt27 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5274_RS07250GCF_040916565#AB5274_RS07250
RRNarL
24 572-25 318 nt · Reverse (-)
AB5274_RS07255GCF_040916565#AB5274_RS07255
HKClassicCurrent focus
25 394-27 921 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916485#AB5247_RS00940Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0460731
Simplified PFAM architecture for HKOC_0460731
PFAM domain coverage: 426 / 869 aa (49.0%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-690]
- Domain count: 4
- Matched identifier: HKOC_0460731
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-690
Cluster members and taxonomy
Representative gene: GCF_040916485#AB5247_RS00940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040916565
AssemblyASM4091656v1 · Scaffoldhaploid
Genome composition2 360 635 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key