1 Response_reg#1
42-110 aa · 69 aa · 33.0% of protein
Raw token
Response_reg:42:0.000000000308:110:69:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5274_RS01290
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_040916565
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040916565#AB5274_RS01290Stable P2CS identifier used across views.
GenomeGCF_040916565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage124 / 209 aa (59.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-202 aa · 55 aa · 26.3% of protein
Raw token
HTH_LUXR:148:0.00000000206:202:55:58- Raw architecture: Response_reg:42:0.000000000308:110:69:111#HTH_LUXR:148:0.00000000206:202:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040916565::NZ_JBCPBI010000003.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41631-42260Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916565::NZ_JBCPBI010000003.1::G00003Context members
AB5274_RS01290
Partner locus tags
AB5274_RS01290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278748670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5274_RS01290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPBI010000003.1Sequence record reported by the local genomic context database.
Genomic interval41 631-42 260 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 631-42 260 ntGCF_040916565::NZ_JBCPBI010000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916565::NZ_JBCPBI010000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPBI010000003.1All displayed genes belong to this local TCS context.
Neighborhood span41 631-42 260 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 631 nt42 260 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5274_RS01290GCF_040916565#AB5274_RS01290
RRNarLCurrent focus
41 631-42 260 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916485#AB5247_RS08880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2054403
Simplified PFAM architecture for RROC_2054403
PFAM domain coverage: 119 / 209 aa (56.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[38-111] | GerE[148-192]
- Domain count: 2
- Matched identifier: RROC_2054403
- Positioned domains: Response_reg 38-111 ; GerE 148-192
Cluster members and taxonomy
Representative gene: GCF_040916485#AB5247_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040916565
AssemblyASM4091656v1 · Scaffoldhaploid
Genome composition2 360 635 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key