1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:1.63e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z57_RS01280
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_040910885
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040910885#AB5Z57_RS01280Stable P2CS identifier used across views.
GenomeGCF_040910885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 248 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-241 aa · 57 aa · 23.0% of protein
Raw token
HTH_LUXR:185:1.74e-22:241:57:58- Raw architecture: Response_reg:9:1.63e-28:133:125:111#HTH_LUXR:185:1.74e-22:241:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040910885::NZ_JBDFZR010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15086-18518Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040910885::NZ_JBDFZR010000002.1::G00002Context members
AB5Z57_RS01275AB5Z57_RS01280
Partner locus tags
AB5Z57_RS01275AB5Z57_RS01280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368212060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z57_RS01280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDFZR010000002.1Sequence record reported by the local genomic context database.
Genomic interval17 772-18 518 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 086-18 518 ntGCF_040910885::NZ_JBDFZR010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040910885::NZ_JBDFZR010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDFZR010000002.1All displayed genes belong to this local TCS context.
Neighborhood span15 086-18 518 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 086 nt18 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z57_RS01275GCF_040910885#AB5Z57_RS01275
HKClassic
15 086-17 695 nt · Forward (+)
AB5Z57_RS01280GCF_040910885#AB5Z57_RS01280
RRNarLCurrent focus
17 772-18 518 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040910885#AB5Z57_RS01280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0753580
Simplified PFAM architecture for RROC_0753580
PFAM domain coverage: 179 / 248 aa (72.2%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-241]
- Domain count: 2
- Matched identifier: RROC_0753580
- Positioned domains: Response_reg 9-132 ; GerE 187-241
Cluster members and taxonomy
Representative gene: GCF_040910885#AB5Z57_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040910885
AssemblyASM4091088v1 · Scaffoldhaploid
Genome composition2 173 500 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key