1 CheW#1
15-149 aa · 135 aa · 45.2% of protein
Raw token
CheW:15:3.38e-33:149:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS01280
Response regulator CheV family
Agathobacter rectalis · GCF_040909645
ClassRRTypeCheVLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040909645#AB5Z44_RS01280Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 299 aa (85.6%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.5% of protein
Raw token
Response_reg:173:6.15e-21:293:124:111- Raw architecture: CheW:15:3.38e-33:149:138:138#Response_reg:173:6.15e-21:293:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040909645::NZ_JBDGCD010000002.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89364-90263Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000002.1::G00005Context members
AB5Z44_RS01280
Partner locus tags
AB5Z44_RS01280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015516160.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZBT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZBT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS01280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000002.1Sequence record reported by the local genomic context database.
Genomic interval89 364-90 263 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 364-90 263 ntGCF_040909645::NZ_JBDGCD010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000002.1All displayed genes belong to this local TCS context.
Neighborhood span89 364-90 263 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 364 nt90 263 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5Z44_RS01280GCF_040909645#AB5Z44_RS01280
RRCheVCurrent focus
89 364-90 263 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS06525Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0574477
Simplified PFAM architecture for RROC_0574477
PFAM domain coverage: 254 / 299 aa (84.9%)
1 aa299 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0574477
- Positioned domains: CheW 15-148 ; CheW 15-148 ; Response_reg 173-292 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS06525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key