1 HisKA#1
246-312 aa · 67 aa · 14.3% of protein
Raw token
HisKA:246:0.000000000000279:312:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z44_RS00425
Histidine kinase, Classic
Agathobacter rectalis · GCF_040909645
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909645#AB5Z44_RS00425Stable P2CS identifier used across views.
GenomeGCF_040909645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 470 aa (38.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
359-470 aa · 112 aa · 23.8% of protein
Raw token
HATPase_c:359:3.16e-27:470:112:109- Raw architecture: HisKA:246:0.000000000000279:312:67:64#HATPase_c:359:3.16e-27:470:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909645::NZ_JBDGCD010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98344-100450Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909645::NZ_JBDGCD010000001.1::G00003Context members
AB5Z44_RS00420AB5Z44_RS00425
Partner locus tags
AB5Z44_RS00420AB5Z44_RS00425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_346991581.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z44_RS00425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGCD010000001.1Sequence record reported by the local genomic context database.
Genomic interval99 038-100 450 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 344-100 450 ntGCF_040909645::NZ_JBDGCD010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909645::NZ_JBDGCD010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGCD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span98 344-100 450 nt2 107 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 344 nt100 450 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z44_RS00420GCF_040909645#AB5Z44_RS00420
RROmpR
98 344-99 048 nt · Forward (+)
AB5Z44_RS00425GCF_040909645#AB5Z44_RS00425
HKClassicCurrent focus
99 038-100 450 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039733425#ABHM26_RS13265Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1724074
Simplified PFAM architecture for HKOC_1724074
PFAM domain coverage: 173 / 470 aa (36.8%)
1 aa470 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[246-307] | HATPase_c[359-469]
- Domain count: 2
- Matched identifier: HKOC_1724074
- Positioned domains: HisKA 246-307 ; HATPase_c 359-469
Cluster members and taxonomy
Representative gene: GCF_039733425#ABHM26_RS13265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_040909645
AssemblyASM4090964v1 · Scaffoldhaploid
Genome composition3 513 043 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 102 · HK 47 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key