1 Response_reg#1
6-106 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:6:2.33e-20:106:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z00_RS12365
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_040909085
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040909085#AB5Z00_RS12365Stable P2CS identifier used across views.
GenomeGCF_040909085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 238 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 37.0% of protein
Raw token
LytTR:141:0.000000000000511:228:93:98- Raw architecture: Response_reg:6:2.33e-20:106:103:111#LytTR:141:0.000000000000511:228:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040909085::NZ_JBDGDE010000021.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1450-2166Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909085::NZ_JBDGDE010000021.1::G00035Context members
AB5Z00_RS12365
Partner locus tags
AB5Z00_RS12365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368303005.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z00_RS12365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDE010000021.1Sequence record reported by the local genomic context database.
Genomic interval1 450-2 166 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 450-2 166 ntGCF_040909085::NZ_JBDGDE010000021.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909085::NZ_JBDGDE010000021.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDE010000021.1All displayed genes belong to this local TCS context.
Neighborhood span1 450-2 166 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 450 nt2 166 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5Z00_RS12365GCF_040909085#AB5Z00_RS12365
RRLytTRCurrent focus
1 450-2 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040909025#AB5071_RS18000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0956043
Simplified PFAM architecture for RROC_0956043
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[142-228]
- Domain count: 2
- Matched identifier: RROC_0956043
- Positioned domains: Response_reg 5-109 ; LytTR 142-228
Cluster members and taxonomy
Representative gene: GCF_040909025#AB5071_RS18000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909085
AssemblyASM4090908v1 · Scaffoldhaploid
Genome composition3 589 586 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key