1 HisKA#1
88-154 aa · 67 aa · 21.9% of protein
Raw token
HisKA:88:0.0000000000624:154:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z00_RS01765
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040909085
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909085#AB5Z00_RS01765Stable P2CS identifier used across views.
GenomeGCF_040909085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 306 aa (50.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-287 aa · 88 aa · 28.8% of protein
Raw token
HATPase_c:200:5.7e-17:287:88:109- Raw architecture: HisKA:88:0.0000000000624:154:67:64#HATPase_c:200:5.7e-17:287:88:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909085::NZ_JBDGDE010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span369940-371515Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909085::NZ_JBDGDE010000001.1::G00004Context members
AB5Z00_RS01765AB5Z00_RS01770
Partner locus tags
AB5Z00_RS01765AB5Z00_RS01770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039960083.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4UZK5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4UZK5_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z00_RS01765Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDE010000001.1Sequence record reported by the local genomic context database.
Genomic interval369 940-370 860 nt921 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span369 940-371 515 ntGCF_040909085::NZ_JBDGDE010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909085::NZ_JBDGDE010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span369 940-371 515 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
369 940 nt371 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z00_RS01765GCF_040909085#AB5Z00_RS01765
HKClassicCurrent focus
369 940-370 860 nt · Reverse (-)
AB5Z00_RS01770GCF_040909085#AB5Z00_RS01770
RROmpR
370 862-371 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15270Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881292
Simplified PFAM architecture for HKOC_2881292
PFAM domain coverage: 159 / 306 aa (52.0%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-154] | HATPase_c[200-291]
- Domain count: 2
- Matched identifier: HKOC_2881292
- Positioned domains: HisKA 88-154 ; HATPase_c 200-291
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909085
AssemblyASM4090908v1 · Scaffoldhaploid
Genome composition3 589 586 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key