1 Response_reg#1
4-112 aa · 109 aa · 47.8% of protein
Raw token
Response_reg:4:2.76e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z00_RS12320
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_040909085
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909085#AB5Z00_RS12320Stable P2CS identifier used across views.
GenomeGCF_040909085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:148:2.57e-36:224:77:77- Raw architecture: Response_reg:4:2.76e-31:112:110:111#Trans_reg_C:148:2.57e-36:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909085::NZ_JBDGDE010000020.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57010-58634Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909085::NZ_JBDGDE010000020.1::G00034Context members
AB5Z00_RS12315AB5Z00_RS12320
Partner locus tags
AB5Z00_RS12315AB5Z00_RS12320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844849.1Primary protein accession used for annex mappings.
UniProt accessionA7B8K2Primary UniProt accession resolved in the annex database.
UniProt IDA7B8K2_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z00_RS12320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDE010000020.1Sequence record reported by the local genomic context database.
Genomic interval57 948-58 634 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 010-58 634 ntGCF_040909085::NZ_JBDGDE010000020.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909085::NZ_JBDGDE010000020.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDE010000020.1All displayed genes belong to this local TCS context.
Neighborhood span57 010-58 634 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 010 nt58 634 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z00_RS12315GCF_040909085#AB5Z00_RS12315
HKClassic
57 010-57 951 nt · Reverse (-)
AB5Z00_RS12320GCF_040909085#AB5Z00_RS12320
RROmpRCurrent focus
57 948-58 634 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS17135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302324
Simplified PFAM architecture for RROC_1302324
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1302324
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS17135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909085
AssemblyASM4090908v1 · Scaffoldhaploid
Genome composition3 589 586 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key