1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000127:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5Z00_RS09720
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_040909085
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040909085#AB5Z00_RS09720Stable P2CS identifier used across views.
GenomeGCF_040909085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:1.13e-28:509:113:109- Raw architecture: HisKA:286:0.00000000000127:353:68:64#HATPase_c:397:1.13e-28:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040909085::NZ_JBDGDE010000013.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61281-63522Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040909085::NZ_JBDGDE010000013.1::G00028Context members
AB5Z00_RS09715AB5Z00_RS09720
Partner locus tags
AB5Z00_RS09715AB5Z00_RS09720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117636214.1Primary protein accession used for annex mappings.
UniProt accessionA0A396G801Primary UniProt accession resolved in the annex database.
UniProt IDA0A396G801_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5Z00_RS09720Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDGDE010000013.1Sequence record reported by the local genomic context database.
Genomic interval61 978-63 522 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 281-63 522 ntGCF_040909085::NZ_JBDGDE010000013.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040909085::NZ_JBDGDE010000013.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDGDE010000013.1All displayed genes belong to this local TCS context.
Neighborhood span61 281-63 522 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 281 nt63 522 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5Z00_RS09715GCF_040909085#AB5Z00_RS09715
RROmpR
61 281-61 985 nt · Reverse (-)
AB5Z00_RS09720GCF_040909085#AB5Z00_RS09720
HKClassicCurrent focus
61 978-63 522 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561395#I2V19_RS08500Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1371780
Simplified PFAM architecture for HKOC_1371780
PFAM domain coverage: 286 / 526 aa (54.4%)
1 aa526 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[29-135] | HisKA[298-365] | HATPase_c[410-520]
- Domain count: 3
- Matched identifier: HKOC_1371780
- Positioned domains: DUF4118 29-135 ; HisKA 298-365 ; HATPase_c 410-520
Cluster members and taxonomy
Representative gene: GCF_015561395#I2V19_RS08500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_040909085
AssemblyASM4090908v1 · Scaffoldhaploid
Genome composition3 589 586 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 97 · HK 46 · RR 50CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key